PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12459
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family E2F/DP
Protein Properties Length: 397aa    MW: 43892.3 Da    PI: 5.4832
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12459genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP78.84.9e-25109174171
   E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
               r+++sL+llt+kf++ll+ +e+g+++ln++ + L   +v  ++RRiYDi+NVLe+++liek  kn irwkg
  EMT12459 109 RYDSSLGLLTKKFINLLKGAEDGTLDLNKAVEIL---EV--QKRRIYDITNVLEGVDLIEKGLKNTIRWKG 174
               6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.1E-27106175IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-15109172IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.0E-31109174IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.4E-23111174IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146603.12E-32186298No hitNo description
SuperFamilySSF1440741.07E-20188297No hitNo description
PfamPF164215.4E-24190295IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006302Biological Processdouble-strand break repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0010332Biological Processresponse to gamma radiation
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MGSSDDADLV GGDVTVNYDG VCDDFVNPKM ICRLSLSELP HPRPPQPVYE NVVPPARRRG  60
RPKSKAPENE QKIEIENGQS EVGKGEISQG HHKESTTGPT KGDAANNCRY DSSLGLLTKK  120
FINLLKGAED GTLDLNKAVE ILEVQKRRIY DITNVLEGVD LIEKGLKNTI RWKGFDMLLP  180
KEVELQTSAL KEELDSSHDK ESRLDEEIRE AQEKLLALKL NKDKKKWLYL SKEDICKIPH  240
LQGSTRIAIH APHGTCVEVP DPNADMDICK DLESQEKHYQ LLLRSSMGPI DCYLISDHQG  300
VSDPEQVAQD NLDHASTAGG SDAPRPVDDH PSQAPEKGEG DTVGKHTSEP SSTHERMPGI  360
LKIVLPDTDV RNAIKTASQT QLIKAARYSR SSNFFAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A3e-20108174673PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239658.11e-157PREDICTED: transcription factor E2FC
TrEMBLM8C0540.0M8C054_AEGTA; Transcription factor E2F2
STRINGBRADI5G01920.11e-158(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.29e-62E2F transcription factor 1